I went through the machine and manually pressed on all the relays and put all the steppers back to zero. Started a game and still getting the continual reset on the Bonus Unit. I adjusted the switches on the far left of the image where they were arcing and then started a game with the playfield up.
Everything was fine again. I put the playfield down and turned the machine on and the score motor continually turned and I wasn't able to start a game. I turned the machine off and lifted the playfield and no score motor turning, but once again I could start a game normally. Had to put pin repair to rest for the night, but very strange...